J5_9T6M_003

3D structure

PDB id

9T6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome from delta-10 strain

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9T6M|1|A|A|109, 9T6M|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9T6M|1|A|C|58
9T6M|1|A|A|59
9T6M|1|A|A|60
9T6M|1|A|G|61
*
9T6M|1|A|C|106
9T6M|1|A|G|107
9T6M|1|A|G|108
9T6M|1|A|A|109
9T6M|1|A|C|110
9T6M|1|A|G|111
9T6M|1|A|G|112
9T6M|1|A|G|113
*
9T6M|1|A|C|314
9T6M|1|A|A|315
9T6M|1|A|C|316
*
9T6M|1|A|G|337
9T6M|1|A|A|338
9T6M|1|A|C|339
*
9T6M|1|A|G|350
9T6M|1|A|G|351
9T6M|1|A|C|352
9T6M|1|A|A|353
9T6M|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain T

Small ribosomal subunit protein bS20

Chain j

Large ribosomal subunit protein uL14