J5_9TEW_003

3D structure

PDB id

9TEW (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDro bound to the initiating Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9TEW|1|A|A|109, 9TEW|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9TEW_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.111

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9TEW|1|A|C|58
9TEW|1|A|A|59
9TEW|1|A|A|60
9TEW|1|A|G|61
*
9TEW|1|A|C|106
9TEW|1|A|G|107
9TEW|1|A|G|108
9TEW|1|A|A|109
9TEW|1|A|C|110
9TEW|1|A|G|111
9TEW|1|A|G|112
9TEW|1|A|G|113
*
9TEW|1|A|C|314
9TEW|1|A|A|315
9TEW|1|A|C|316
*
9TEW|1|A|G|337
9TEW|1|A|A|338
9TEW|1|A|C|339
*
9TEW|1|A|G|350
9TEW|1|A|G|351
9TEW|1|A|C|352
9TEW|1|A|A|353
9TEW|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20

Chain j

Large ribosomal subunit protein uL14