J5_9TEX_004

3D structure

PDB id

9TEX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dal2 bound to the Escherichia coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9TEX|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9TEX_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.055

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TEX|1|a|C|47
9TEX|1|a|G|48
9TEX|1|a|A|49
9TEX|1|a|U|50
9TEX|1|a|G|51
9TEX|1|a|A|52
9TEX|1|a|A|53
9TEX|1|a|G|54
*
9TEX|1|a|C|116
9TEX|1|a|G|117
9TEX|1|a|A|118
9TEX|1|a|A|119
9TEX|1|a|U|120
9TEX|1|a|G|121
*
9TEX|1|a|C|130
9TEX|1|a|A|131
*
9TEX|1|a|U|148
9TEX|1|a|A|149
9TEX|1|a|U|150
*
9TEX|1|a|A|176
9TEX|1|a|G|177
9TEX|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

Large ribosomal subunit protein bL34