J5_9TI8_005

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

GCAAAAUGA*UG*CC*GUGAAUAGG*CAC

Length

25 nucleotides

Bulged bases

9TI8|1|A|G|1785, 9TI8|1|A|G|1790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9TI8_005 not in the Motif Atlas

Homologous match to J5_7A0S_005

Geometric discrepancy: 0.1273

The information below is about J5_7A0S_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.3

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9TI8|1|A|G|1718
9TI8|1|A|C|1719
9TI8|1|A|A|1720
9TI8|1|A|A|1721
9TI8|1|A|A|1722
9TI8|1|A|A|1723
9TI8|1|A|U|1724
9TI8|1|A|G|1725
9TI8|1|A|A|1726
*
9TI8|1|A|U|1750
9TI8|1|A|G|1751
*
9TI8|1|A|C|1778
9TI8|1|A|C|1779
*
9TI8|1|A|G|1783
9TI8|1|A|U|1784
9TI8|1|A|G|1785
9TI8|1|A|A|1786
9TI8|1|A|A|1787
9TI8|1|A|U|1788
9TI8|1|A|A|1789
9TI8|1|A|G|1790
9TI8|1|A|G|1791
*
9TI8|1|A|C|2015
9TI8|1|A|A|2016
9TI8|1|A|C|2017

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L3

Chain N

50S ribosomal protein L14

Chain S

50S ribosomal protein L19