J5_9TI9_010

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9TI9|1|a|A|108, 9TI9|1|a|C|360

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9TI9_010 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1255

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9TI9|1|a|C|59
9TI9|1|a|A|60
9TI9|1|a|A|61
9TI9|1|a|G|62
*
9TI9|1|a|C|105
9TI9|1|a|G|106
9TI9|1|a|G|107
9TI9|1|a|A|108
9TI9|1|a|C|109
9TI9|1|a|G|110
9TI9|1|a|G|111
9TI9|1|a|G|112
*
9TI9|1|a|C|322
9TI9|1|a|A|323
9TI9|1|a|C|324
*
9TI9|1|a|G|345
9TI9|1|a|A|346
9TI9|1|a|C|347
*
9TI9|1|a|G|358
9TI9|1|a|G|359
9TI9|1|a|C|360
9TI9|1|a|A|361
9TI9|1|a|G|362

Current chains

Chain a

16S rRNA

Nearby chains

Chain N

50S ribosomal protein L14

Chain q

30S ribosomal protein S16

Chain u

30S ribosomal protein S20