J5_9TKO_001

3D structure

PDB id

9TKO (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 bound (30S PIC-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKO|1|D1|C|36
9TKO|1|D1|U|37
9TKO|1|D1|G|38
9TKO|1|D1|G|39
*
9TKO|1|D1|C|403
9TKO|1|D1|G|404
9TKO|1|D1|U|405
9TKO|1|D1|G|406
*
9TKO|1|D1|C|436
9TKO|1|D1|U|437
9TKO|1|D1|U|438
9TKO|1|D1|U|439
9TKO|1|D1|C|440
*
9TKO|1|D1|G|497
9TKO|1|D1|A|498
9TKO|1|D1|A|499
9TKO|1|D1|G|500
*
9TKO|1|D1|C|545
9TKO|1|D1|A|546
9TKO|1|D1|A|547
9TKO|1|D1|G|548

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain AK

Small ribosomal subunit protein uS12

Chain F2

Translation initiation factor IF-2