J5_9TZ5_001

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9TZ5|1|a|U|58

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TZ5|1|a|C|55
9TZ5|1|a|G|56
9TZ5|1|a|A|57
9TZ5|1|a|U|58
9TZ5|1|a|G|59
9TZ5|1|a|A|60
9TZ5|1|a|A|61
9TZ5|1|a|G|62
*
9TZ5|1|a|C|124
9TZ5|1|a|G|125
9TZ5|1|a|A|126
9TZ5|1|a|A|127
9TZ5|1|a|U|128
9TZ5|1|a|G|129
*
9TZ5|1|a|C|138
9TZ5|1|a|A|139
*
9TZ5|1|a|U|152
9TZ5|1|a|A|153
9TZ5|1|a|U|154
*
9TZ5|1|a|A|180
9TZ5|1|a|G|181
9TZ5|1|a|G|182

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain y

Large ribosomal subunit protein bL34