J5_9TZ5_005
3D structure
- PDB id
- 9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.22 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCG(2MA)(PSU)GUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9TZ5|1|a|A|2078, 9TZ5|1|a|A|2464, 9TZ5|1|a|U|2465
- QA status
- Modified nucleotides: 2MA, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TZ5|1|a|G|2073
9TZ5|1|a|A|2074
9TZ5|1|a|A|2075
9TZ5|1|a|A|2076
9TZ5|1|a|G|2077
9TZ5|1|a|A|2078
9TZ5|1|a|C|2079
9TZ5|1|a|C|2080
*
9TZ5|1|a|G|2462
9TZ5|1|a|G|2463
9TZ5|1|a|A|2464
9TZ5|1|a|U|2465
9TZ5|1|a|A|2466
9TZ5|1|a|A|2467
9TZ5|1|a|C|2468
9TZ5|1|a|A|2469
*
9TZ5|1|a|U|2516
9TZ5|1|a|C|2517
9TZ5|1|a|G|2518
9TZ5|1|a|2MA|2519
9TZ5|1|a|PSU|2520
9TZ5|1|a|G|2521
9TZ5|1|a|U|2522
9TZ5|1|a|C|2523
*
9TZ5|1|a|G|2598
9TZ5|1|a|G|2599
9TZ5|1|a|U|2600
9TZ5|1|a|U|2601
9TZ5|1|a|U|2602
9TZ5|1|a|A|2603
9TZ5|1|a|G|2604
*
9TZ5|1|a|C|2622
9TZ5|1|a|G|2623
9TZ5|1|a|G|2624||A
9TZ5|1|a|U|2625||A
9TZ5|1|a|C|2626||A
9TZ5|1|a|C|2627
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain d
- Large ribosomal subunit protein uL3
- Chain j
- Large ribosomal subunit protein uL22
- Chain k
- Large ribosomal subunit protein uL15
- Chain o
- Large ribosomal subunit protein uL2
- Chain s
- Large ribosomal subunit protein uL16
- Chain v
- Large ribosomal subunit protein bL32
- Chain w
- Large ribosomal subunit protein uL4
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