J5_9TZ9_006
3D structure
- PDB id
- 9TZ9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Empty 50S Subunit of the Coxiella burnetii Ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UUUA*UUUG*CU*AG*CGGAUAAAA
- Length
- 21 nucleotides
- Bulged bases
- 9TZ9|1|a|U|2092, 9TZ9|1|a|G|2444, 9TZ9|1|a|G|2445, 9TZ9|1|a|A|2446, 9TZ9|1|a|U|2447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZ9_006 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.0966
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9TZ9|1|a|U|2090
9TZ9|1|a|U|2091
9TZ9|1|a|U|2092
9TZ9|1|a|A|2093
*
9TZ9|1|a|U|2259
9TZ9|1|a|U|2260
9TZ9|1|a|U|2261
9TZ9|1|a|G|2262
*
9TZ9|1|a|C|2274
9TZ9|1|a|U|2275
*
9TZ9|1|a|A|2297
9TZ9|1|a|G|2298
*
9TZ9|1|a|C|2443
9TZ9|1|a|G|2444
9TZ9|1|a|G|2445
9TZ9|1|a|A|2446
9TZ9|1|a|U|2447
9TZ9|1|a|A|2448
9TZ9|1|a|A|2449
9TZ9|1|a|A|2450
9TZ9|1|a|A|2451
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain 8
- Large ribosomal subunit protein bL27
- Chain 9
- Large ribosomal subunit protein bL28
- Chain k
- Large ribosomal subunit protein uL15
- Chain o
- Large ribosomal subunit protein uL2
- Chain z
- Large ribosomal subunit protein bL35
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