J5_9TZE_003
3D structure
- PDB id
- 9TZE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S Coxiella burnetii Ribosome with Doxycycline and HPFcold
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9TZE|1|A|A|106, 9TZE|1|A|C|349
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9TZE_003 not in the Motif Atlas
- Homologous match to J5_6CZR_021
- Geometric discrepancy: 0.1169
- The information below is about J5_6CZR_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_59910.5
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9TZE|1|A|C|57
9TZE|1|A|A|58
9TZE|1|A|A|59
9TZE|1|A|G|60
*
9TZE|1|A|C|103
9TZE|1|A|G|104
9TZE|1|A|G|105
9TZE|1|A|A|106
9TZE|1|A|C|107
9TZE|1|A|G|108
9TZE|1|A|G|109
9TZE|1|A|G|110
*
9TZE|1|A|C|311
9TZE|1|A|A|312
9TZE|1|A|C|313
*
9TZE|1|A|G|334
9TZE|1|A|A|335
9TZE|1|A|C|336
*
9TZE|1|A|G|347
9TZE|1|A|G|348
9TZE|1|A|C|349
9TZE|1|A|A|350
9TZE|1|A|G|351
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain P
- Small ribosomal subunit protein bS16
- Chain T
- Small ribosomal subunit protein bS20
- Chain c
- Large ribosomal subunit protein bL19
- Chain x
- Large ribosomal subunit protein uL14
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