J5_9UZL_002

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9UZL|1|2|G|579, 9UZL|1|2|A|580

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|C|30
9UZL|1|2|U|31
9UZL|1|2|U|32
9UZL|1|2|G|33
9UZL|1|2|U|34
*
9UZL|1|2|A|511
9UZL|1|2|A|512
9UZL|1|2|A|513
9UZL|1|2|U|514
9UZL|1|2|A|515
9UZL|1|2|A|516
9UZL|1|2|C|517
*
9UZL|1|2|G|548
9UZL|1|2|G|549
9UZL|1|2|A|550
9UZL|1|2|A|551
9UZL|1|2|U|552
9UZL|1|2|G|553
9UZL|1|2|A|554
9UZL|1|2|G|555
*
9UZL|1|2|C|575
9UZL|1|2|G|576
9UZL|1|2|A|577
9UZL|1|2|G|578
9UZL|1|2|G|579
9UZL|1|2|A|580
9UZL|1|2|U|581
9UZL|1|2|C|582
9UZL|1|2|C|583
9UZL|1|2|A|584
9UZL|1|2|U|585
*
9UZL|1|2|A|631
9UZL|1|2|U|632
9UZL|1|2|A|633
9UZL|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12

Chain i

Small ribosomal subunit protein eS30