J5_9UZL_004

3D structure

PDB id

9UZL (explore in PDB, NAKB, or RNA 3D Hub)

Description

EMCV IRES captured on mammalian 40S ribosome with initiator tRNA and eIF2

Experimental method

ELECTRON MICROSCOPY

Resolution

5.01 Å

Loop

Sequence

AUCUUGUG*CGCCCCUUGC*GCGUU*AUGGAAUAGG*CAUGAU

Length

39 nucleotides

Bulged bases

9UZL|1|2|U|739, 9UZL|1|2|G|740, 9UZL|1|2|G|794, 9UZL|1|2|G|863, 9UZL|1|2|G|864, 9UZL|1|2|U|867, 9UZL|1|2|A|909

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZL|1|2|A|675
9UZL|1|2|U|676
9UZL|1|2|C|677
9UZL|1|2|U|678
9UZL|1|2|U|679
9UZL|1|2|G|680
9UZL|1|2|U|681
9UZL|1|2|G|682
*
9UZL|1|2|C|732
9UZL|1|2|G|733
9UZL|1|2|C|734
9UZL|1|2|C|735
9UZL|1|2|C|736
9UZL|1|2|C|737
9UZL|1|2|U|738
9UZL|1|2|U|739
9UZL|1|2|G|740
9UZL|1|2|C|741
*
9UZL|1|2|G|792
9UZL|1|2|C|793
9UZL|1|2|G|794
9UZL|1|2|U|795
9UZL|1|2|U|796
*
9UZL|1|2|A|861
9UZL|1|2|U|862
9UZL|1|2|G|863
9UZL|1|2|G|864
9UZL|1|2|A|865
9UZL|1|2|A|866
9UZL|1|2|U|867
9UZL|1|2|A|868
9UZL|1|2|G|869
9UZL|1|2|G|870
*
9UZL|1|2|C|908
9UZL|1|2|A|909
9UZL|1|2|U|910
9UZL|1|2|G|911
9UZL|1|2|A|912
9UZL|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS17

Chain P

Small ribosomal subunit protein uS15

Chain Y

Small ribosomal subunit protein uS8

Chain Z

Small ribosomal subunit protein uS12