J5_9UZM_002

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9UZM|1|2|G|579, 9UZM|1|2|A|580, 9UZM|1|2|U|581, 9UZM|1|2|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|C|30
9UZM|1|2|U|31
9UZM|1|2|U|32
9UZM|1|2|G|33
9UZM|1|2|U|34
*
9UZM|1|2|A|511
9UZM|1|2|A|512
9UZM|1|2|A|513
9UZM|1|2|U|514
9UZM|1|2|A|515
9UZM|1|2|A|516
9UZM|1|2|C|517
*
9UZM|1|2|G|548
9UZM|1|2|G|549
9UZM|1|2|A|550
9UZM|1|2|A|551
9UZM|1|2|U|552
9UZM|1|2|G|553
9UZM|1|2|A|554
9UZM|1|2|G|555
*
9UZM|1|2|C|575
9UZM|1|2|G|576
9UZM|1|2|A|577
9UZM|1|2|G|578
9UZM|1|2|G|579
9UZM|1|2|A|580
9UZM|1|2|U|581
9UZM|1|2|C|582
9UZM|1|2|C|583
9UZM|1|2|A|584
9UZM|1|2|U|585
*
9UZM|1|2|A|631
9UZM|1|2|U|632
9UZM|1|2|A|633
9UZM|1|2|G|634

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

Small ribosomal subunit protein uS4

Chain Z

Small ribosomal subunit protein uS12

Chain i

Small ribosomal subunit protein eS30