J5_9UZM_004

3D structure

PDB id

9UZM (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosome without initiation factors

Experimental method

ELECTRON MICROSCOPY

Resolution

4.5 Å

Loop

Sequence

AUCUUGUG*CGCCCCUUG*CGUU*AUGGAAUAG*UGAU

Length

34 nucleotides

Bulged bases

9UZM|1|2|U|739, 9UZM|1|2|G|863, 9UZM|1|2|G|864, 9UZM|1|2|U|867

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9UZM|1|2|A|675
9UZM|1|2|U|676
9UZM|1|2|C|677
9UZM|1|2|U|678
9UZM|1|2|U|679
9UZM|1|2|G|680
9UZM|1|2|U|681
9UZM|1|2|G|682
*
9UZM|1|2|C|732
9UZM|1|2|G|733
9UZM|1|2|C|734
9UZM|1|2|C|735
9UZM|1|2|C|736
9UZM|1|2|C|737
9UZM|1|2|U|738
9UZM|1|2|U|739
9UZM|1|2|G|740
*
9UZM|1|2|C|793
9UZM|1|2|G|794
9UZM|1|2|U|795
9UZM|1|2|U|796
*
9UZM|1|2|A|861
9UZM|1|2|U|862
9UZM|1|2|G|863
9UZM|1|2|G|864
9UZM|1|2|A|865
9UZM|1|2|A|866
9UZM|1|2|U|867
9UZM|1|2|A|868
9UZM|1|2|G|869
*
9UZM|1|2|U|910
9UZM|1|2|G|911
9UZM|1|2|A|912
9UZM|1|2|U|913

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain J

Small ribosomal subunit protein eS7

Chain N

Small ribosomal subunit protein uS17

Chain P

Small ribosomal subunit protein uS15

Chain Y

Small ribosomal subunit protein uS8

Chain Z

Small ribosomal subunit protein uS12