J5_9VTH_005

3D structure

PDB id

9VTH (explore in PDB, NAKB, or RNA 3D Hub)

Description

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

4.7 Å

Loop

Sequence

GGUAUCUACUACUC*GUGCAACAAACC*GAUG*CGGAU*ACGC

Length

39 nucleotides

Bulged bases

9VTH|1|11|U|129, 9VTH|1|11|U|131, 9VTH|1|11|C|132, 9VTH|1|11|U|133, 9VTH|1|11|C|138, 9VTH|1|11|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9VTH|1|11|G|127
9VTH|1|11|G|128
9VTH|1|11|U|129
9VTH|1|11|A|130
9VTH|1|11|U|131
9VTH|1|11|C|132
9VTH|1|11|U|133
9VTH|1|11|A|134
9VTH|1|11|C|135
9VTH|1|11|U|136
9VTH|1|11|A|137
9VTH|1|11|C|138
9VTH|1|11|U|139
9VTH|1|11|C|140
*
9VTH|1|11|G|171
9VTH|1|11|U|172
9VTH|1|11|G|173
9VTH|1|11|C|174
9VTH|1|11|A|175
9VTH|1|11|A|176
9VTH|1|11|C|177
9VTH|1|11|A|178
9VTH|1|11|A|179
9VTH|1|11|A|180
9VTH|1|11|C|181
9VTH|1|11|C|182
*
9VTH|1|11|G|198
9VTH|1|11|A|199
9VTH|1|11|U|200
9VTH|1|11|G|201
*
9VTH|1|11|C|266
9VTH|1|11|G|267
9VTH|1|11|G|268
9VTH|1|11|A|269
9VTH|1|11|U|270
*
9VTH|1|11|A|292
9VTH|1|11|C|293
9VTH|1|11|G|294
9VTH|1|11|C|295

Current chains

Chain 11

18S rRNA

Nearby chains

Chain SQ

40S ribosomal protein S4

Chain SR

40S ribosomal protein S6