J5_9VTH_006
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAUGAAG*UGAACG*CG*CAC*GGG
- Length
- 22 nucleotides
- Bulged bases
- 9VTH|1|13|U|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9VTH_006 not in the Motif Atlas
- Homologous match to J5_9H3G_001
- Geometric discrepancy: 0.084
- The information below is about J5_9H3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9VTH|1|13|C|38
9VTH|1|13|G|39
9VTH|1|13|A|40
9VTH|1|13|U|41
9VTH|1|13|G|42
9VTH|1|13|A|43
9VTH|1|13|A|44
9VTH|1|13|G|45
*
9VTH|1|13|U|105
9VTH|1|13|G|106
9VTH|1|13|A|107
9VTH|1|13|A|108
9VTH|1|13|C|109
9VTH|1|13|G|110
*
9VTH|1|13|C|118
9VTH|1|13|G|119
*
9VTH|1|13|C|142
9VTH|1|13|A|143
9VTH|1|13|C|144
*
9VTH|1|14|G|18
9VTH|1|14|G|19
9VTH|1|14|G|20
Current chains
- Chain 13
- 5.8S rRNA
- Chain 14
- 25S rRNA
Nearby chains
- Chain LM
- Large ribosomal subunit protein uL23
- Chain LO
- 60S ribosomal protein L35-like
- Chain LU
- Ribosomal protein L15
- Chain Lk
- Ribosomal protein L37
Coloring options: