J5_9VTH_007
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9VTH|1|14|U|1447
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9VTH_007 not in the Motif Atlas
- Homologous match to J5_9PN5_002
- Geometric discrepancy: 0.0668
- The information below is about J5_9PN5_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_08384.4
- Basepair signature
- cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
9VTH|1|14|G|669
9VTH|1|14|G|670
9VTH|1|14|A|671
9VTH|1|14|G|672
9VTH|1|14|U|673
9VTH|1|14|C|674
*
9VTH|1|14|G|809
9VTH|1|14|G|810
9VTH|1|14|A|811
9VTH|1|14|C|812
*
9VTH|1|14|G|951
9VTH|1|14|U|952
9VTH|1|14|U|953
9VTH|1|14|C|954
*
9VTH|1|14|G|1387
9VTH|1|14|C|1388
*
9VTH|1|14|G|1442
9VTH|1|14|C|1443
9VTH|1|14|A|1444
9VTH|1|14|G|1445
9VTH|1|14|A|1446
9VTH|1|14|U|1447
9VTH|1|14|C|1448
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 13
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LD
- 60S ribosomal protein L4-like
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LS
- 60S ribosomal protein L13
- Chain LU
- Ribosomal protein L15
- Chain Lc
- 60S ribosomal protein L28-1-like
- Chain Lg
- 60S ribosomal protein L32-1
Coloring options: