J5_9VTH_008
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- CGAG*CGUAA*UGAUUG*CGA*UGUGAG
- Length
- 24 nucleotides
- Bulged bases
- 9VTH|1|14|U|729, 9VTH|1|14|U|730, 9VTH|1|14|U|794, 9VTH|1|14|G|795
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9VTH_008 not in the Motif Atlas
- Homologous match to J5_9H3G_003
- Geometric discrepancy: 0.1629
- The information below is about J5_9H3G_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|C|686
9VTH|1|14|G|687
9VTH|1|14|A|688
9VTH|1|14|G|689
*
9VTH|1|14|C|715
9VTH|1|14|G|716
9VTH|1|14|U|717
9VTH|1|14|A|718
9VTH|1|14|A|719
*
9VTH|1|14|U|726
9VTH|1|14|G|727
9VTH|1|14|A|728
9VTH|1|14|U|729
9VTH|1|14|U|730
9VTH|1|14|G|731
*
9VTH|1|14|C|759
9VTH|1|14|G|760
9VTH|1|14|A|761
*
9VTH|1|14|U|792
9VTH|1|14|G|793
9VTH|1|14|U|794
9VTH|1|14|G|795
9VTH|1|14|A|796
9VTH|1|14|G|797
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain LD
- 60S ribosomal protein L4-like
- Chain LI
- 60s ribosomal protein l27a-3
- Chain LS
- 60S ribosomal protein L13
- Chain LV
- 60S ribosomal protein L18-2
- Chain Ld
- 60S ribosomal protein L29
- Chain Lj
- 60S ribosomal protein L36
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