J5_9VTH_010
3D structure
- PDB id
- 9VTH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 80S and initiator tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.7 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9VTH|1|14|A|2407, 9VTH|1|14|A|2820, 9VTH|1|14|G|2877, 9VTH|1|14|U|2981, 9VTH|1|14|U|2982
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9VTH|1|14|A|2402
9VTH|1|14|G|2403
9VTH|1|14|A|2404
9VTH|1|14|A|2405
9VTH|1|14|G|2406
9VTH|1|14|A|2407
9VTH|1|14|C|2408
9VTH|1|14|C|2409
*
9VTH|1|14|G|2818
9VTH|1|14|G|2819
9VTH|1|14|A|2820
9VTH|1|14|U|2821
9VTH|1|14|A|2822
9VTH|1|14|A|2823
9VTH|1|14|C|2824
9VTH|1|14|U|2825
9VTH|1|14|G|2826
*
9VTH|1|14|C|2870
9VTH|1|14|U|2871
9VTH|1|14|U|2872
9VTH|1|14|C|2873
9VTH|1|14|G|2874
9VTH|1|14|A|2875
9VTH|1|14|U|2876
9VTH|1|14|G|2877
9VTH|1|14|U|2878
9VTH|1|14|C|2879
*
9VTH|1|14|G|2954
9VTH|1|14|G|2955
9VTH|1|14|U|2956
9VTH|1|14|U|2957
9VTH|1|14|U|2958
9VTH|1|14|A|2959
9VTH|1|14|G|2960
*
9VTH|1|14|U|2978
9VTH|1|14|A|2979
9VTH|1|14|G|2980
9VTH|1|14|U|2981
9VTH|1|14|U|2982
9VTH|1|14|U|2983
Current chains
- Chain 14
- 25S rRNA
Nearby chains
- Chain 16
- Transfer RNA; tRNA
- Chain LB
- 60S ribosomal protein L8-like
- Chain LC
- 60S ribosomal protein L3
- Chain LD
- 60S ribosomal protein L4-like
- Chain Ld
- 60S ribosomal protein L29
Coloring options: