J5_9VXM_004
3D structure
- PDB id
- 9VXM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitoribosome in a non-rotated state, with multiple neomycin molecules bound, featuring A/A-site and P/P-site tRNAs
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUUA*UUCG*CU*AG*CGGAACAA
- Length
- 20 nucleotides
- Bulged bases
- 9VXM|1|A|U|2739, 9VXM|1|A|G|2916, 9VXM|1|A|G|2917, 9VXM|1|A|A|2918
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9VXM_004 not in the Motif Atlas
- Homologous match to J5_7A0S_007
- Geometric discrepancy: 0.2248
- The information below is about J5_7A0S_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_39529.2
- Basepair signature
- cWW-cWH-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9VXM|1|A|U|2737
9VXM|1|A|U|2738
9VXM|1|A|U|2739
9VXM|1|A|A|2740
*
9VXM|1|A|U|2807
9VXM|1|A|U|2808
9VXM|1|A|C|2809
9VXM|1|A|G|2810
*
9VXM|1|A|C|2822
9VXM|1|A|U|2823
*
9VXM|1|A|A|2845
9VXM|1|A|G|2846
*
9VXM|1|A|C|2915
9VXM|1|A|G|2916
9VXM|1|A|G|2917
9VXM|1|A|A|2918
9VXM|1|A|A|2919
9VXM|1|A|C|2920
9VXM|1|A|A|2921
9VXM|1|A|A|2922
Current chains
- Chain A
- 16S mitochondrial rRNA
Nearby chains
- Chain 1
- Large ribosomal subunit protein bL33m
- Chain 3
- Large ribosomal subunit protein bL35m
- Chain D
- Large ribosomal subunit protein uL2m
- Chain M
- Large ribosomal subunit protein uL15m
- Chain W
- Large ribosomal subunit protein bL27m
- Chain X
- Large ribosomal subunit protein bL28m
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