Loop J5_9W0N

3D structure

PDB id: 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
Description: Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 3.5 Å

Loop

Sequence: CAG*CGUACCU*AUGGG*CAUAAGUAA*UGAAAUUG
Length: 32 nucleotides
Bulged bases: 9W0N|1|1|A|532, 9W0N|1|1|U|562
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

9W0N|1|1|C|531
9W0N|1|1|A|532
9W0N|1|1|G|533
*
9W0N|1|1|C|560
9W0N|1|1|G|561
9W0N|1|1|U|562
9W0N|1|1|A|563
9W0N|1|1|C|564
9W0N|1|1|C|565
9W0N|1|1|U|566
*
9W0N|1|1|A|575
9W0N|1|1|U|576
9W0N|1|1|G|577
9W0N|1|1|G|578
9W0N|1|1|G|579
*
9W0N|1|1|C|1261
9W0N|1|1|A|1262
9W0N|1|1|U|1263
9W0N|1|1|A|1264
9W0N|1|1|A|1265
9W0N|1|1|G|1266
9W0N|1|1|U|1267
9W0N|1|1|A|1268
9W0N|1|1|A|1269
*
9W0N|1|1|U|2011
9W0N|1|1|G|2012
9W0N|1|1|A|2013
9W0N|1|1|A|2014
9W0N|1|1|A|2015
9W0N|1|1|U|2016
9W0N|1|1|U|2017
9W0N|1|1|G|2018

Current chains

Chain 1: 23S rRNA

Nearby chains

Chain B: Large ribosomal subunit protein bL32
Chain d: Large ribosomal subunit protein uL4
Chain l: Large ribosomal subunit protein uL15
Chain q: Large ribosomal subunit protein bL20
Chain r: Large ribosomal subunit protein bL21
Chain s: Large ribosomal subunit protein uL22

J5_9W0N_002