J5_9W0N_004

3D structure

PDB id

9W0N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GCAAAAUGG*CG*UC*GAUACCAGC*GGC

Length

25 nucleotides

Bulged bases

9W0N|1|1|U|1758, 9W0N|1|1|G|1763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9W0N_004 not in the Motif Atlas

Homologous match to J5_8B0X_007

Geometric discrepancy: 0.1146

The information below is about J5_8B0X_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_99177.3

Basepair signature

cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

11

Unit IDs

9W0N|1|1|G|1674
9W0N|1|1|C|1675
9W0N|1|1|A|1676
9W0N|1|1|A|1677
9W0N|1|1|A|1678
9W0N|1|1|A|1679
9W0N|1|1|U|1680
9W0N|1|1|G|1681
9W0N|1|1|G|1682
*
9W0N|1|1|C|1706
9W0N|1|1|G|1707
*
9W0N|1|1|U|1751
9W0N|1|1|C|1752
*
9W0N|1|1|G|1756
9W0N|1|1|A|1757
9W0N|1|1|U|1758
9W0N|1|1|A|1759
9W0N|1|1|C|1760
9W0N|1|1|C|1761
9W0N|1|1|A|1762
9W0N|1|1|G|1763
9W0N|1|1|C|1764
*
9W0N|1|1|G|1988
9W0N|1|1|G|1989
9W0N|1|1|C|1990

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL3

Chain k

Large ribosomal subunit protein uL14

Chain p

Large ribosomal subunit protein bL19