J5_9W0N_005
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAAGACC*GGAUAACA*UCGAUGUC*GGUUUAG*CGGUCC
- Length
- 37 nucleotides
- Bulged bases
- 9W0N|1|1|A|2062, 9W0N|1|1|A|2448, 9W0N|1|1|U|2449, 9W0N|1|1|U|2609, 9W0N|1|1|C|2610
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|1|G|2057
9W0N|1|1|A|2058
9W0N|1|1|A|2059
9W0N|1|1|A|2060
9W0N|1|1|G|2061
9W0N|1|1|A|2062
9W0N|1|1|C|2063
9W0N|1|1|C|2064
*
9W0N|1|1|G|2446
9W0N|1|1|G|2447
9W0N|1|1|A|2448
9W0N|1|1|U|2449
9W0N|1|1|A|2450
9W0N|1|1|A|2451
9W0N|1|1|C|2452
9W0N|1|1|A|2453
*
9W0N|1|1|U|2500
9W0N|1|1|C|2501
9W0N|1|1|G|2502
9W0N|1|1|A|2503
9W0N|1|1|U|2504
9W0N|1|1|G|2505
9W0N|1|1|U|2506
9W0N|1|1|C|2507
*
9W0N|1|1|G|2582
9W0N|1|1|G|2583
9W0N|1|1|U|2584
9W0N|1|1|U|2585
9W0N|1|1|U|2586
9W0N|1|1|A|2587
9W0N|1|1|G|2588
*
9W0N|1|1|C|2606
9W0N|1|1|G|2607
9W0N|1|1|G|2608
9W0N|1|1|U|2609
9W0N|1|1|C|2610
9W0N|1|1|C|2611
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 5
- Transfer RNA; tRNA
- Chain B
- Large ribosomal subunit protein bL32
- Chain b
- Large ribosomal subunit protein uL2
- Chain c
- Large ribosomal subunit protein uL3
- Chain d
- Large ribosomal subunit protein uL4
- Chain l
- Large ribosomal subunit protein uL15
- Chain m
- Large ribosomal subunit protein uL16
- Chain s
- Large ribosomal subunit protein uL22
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