J5_9W0N_008
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG
- Length
- 28 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9W0N_008 not in the Motif Atlas
- Homologous match to J5_8B0X_002
- Geometric discrepancy: 0.141
- The information below is about J5_8B0X_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9W0N|1|3|C|36
9W0N|1|3|U|37
9W0N|1|3|G|38
9W0N|1|3|G|39
*
9W0N|1|3|C|403
9W0N|1|3|G|404
9W0N|1|3|U|405
9W0N|1|3|G|406
*
9W0N|1|3|C|436
9W0N|1|3|U|437
9W0N|1|3|U|438
9W0N|1|3|U|439
9W0N|1|3|C|440
9W0N|1|3|A|441
9W0N|1|3|G|442
*
9W0N|1|3|C|492
9W0N|1|3|A|493
9W0N|1|3|G|494
9W0N|1|3|A|495
9W0N|1|3|A|496
9W0N|1|3|G|497
9W0N|1|3|A|498
9W0N|1|3|A|499
9W0N|1|3|G|500
*
9W0N|1|3|C|545
9W0N|1|3|A|546
9W0N|1|3|A|547
9W0N|1|3|G|548
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- Small ribosomal subunit protein uS4
- Chain Q
- Small ribosomal subunit protein uS12
Coloring options: