J5_9W0N_009
3D structure
- PDB id
- 9W0N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli transcription-translation coupled complex class B (TTC-B) that ribosome walking for 4 codons to a 9 codon mRNA spacer, and fMet-tRNAs in E-site and P-site of the ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAAG*CGGACGGG*CAC*GAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9W0N|1|3|A|109, 9W0N|1|3|C|352
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9W0N_009 not in the Motif Atlas
- Homologous match to J5_8B0X_003
- Geometric discrepancy: 0.0689
- The information below is about J5_8B0X_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.3
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9W0N|1|3|C|58
9W0N|1|3|A|59
9W0N|1|3|A|60
9W0N|1|3|G|61
*
9W0N|1|3|C|106
9W0N|1|3|G|107
9W0N|1|3|G|108
9W0N|1|3|A|109
9W0N|1|3|C|110
9W0N|1|3|G|111
9W0N|1|3|G|112
9W0N|1|3|G|113
*
9W0N|1|3|C|314
9W0N|1|3|A|315
9W0N|1|3|C|316
*
9W0N|1|3|G|337
9W0N|1|3|A|338
9W0N|1|3|C|339
*
9W0N|1|3|G|350
9W0N|1|3|G|351
9W0N|1|3|C|352
9W0N|1|3|A|353
9W0N|1|3|G|354
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain U
- Small ribosomal subunit protein bS16
- Chain Y
- Small ribosomal subunit protein bS20
- Chain k
- Large ribosomal subunit protein uL14
- Chain p
- Large ribosomal subunit protein bL19
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