J5_9WNR_004

3D structure

PDB id

9WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome in complex with an engineered arrest peptide and trigger factor

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9WNR|1|b|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WNR_004 not in the Motif Atlas

Homologous match to J5_8B0X_004

Geometric discrepancy: 0.0817

The information below is about J5_8B0X_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_27223.3

Basepair signature

cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9WNR|1|b|C|47
9WNR|1|b|G|48
9WNR|1|b|A|49
9WNR|1|b|U|50
9WNR|1|b|G|51
9WNR|1|b|A|52
9WNR|1|b|A|53
9WNR|1|b|G|54
*
9WNR|1|b|C|116
9WNR|1|b|G|117
9WNR|1|b|A|118
9WNR|1|b|A|119
9WNR|1|b|U|120
9WNR|1|b|G|121
*
9WNR|1|b|C|130
9WNR|1|b|A|131
*
9WNR|1|b|U|148
9WNR|1|b|A|149
9WNR|1|b|U|150
*
9WNR|1|b|A|176
9WNR|1|b|G|177
9WNR|1|b|G|178

Current chains

Chain b

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L34