J5_9WW4_001
3D structure
- PDB id
- 9WW4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome non-rotated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.48 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9WW4|1|AC|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9WW4_001 not in the Motif Atlas
- Homologous match to J5_8GLP_001
- Geometric discrepancy: 0.0461
- The information below is about J5_8GLP_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9WW4|1|AA|G|19
9WW4|1|AA|U|20
9WW4|1|AA|G|21
*
9WW4|1|AC|C|35
9WW4|1|AC|G|36
9WW4|1|AC|A|37
9WW4|1|AC|U|38
9WW4|1|AC|G|39
9WW4|1|AC|A|40
9WW4|1|AC|A|41
9WW4|1|AC|G|42
*
9WW4|1|AC|C|101
9WW4|1|AC|G|102
9WW4|1|AC|A|103
9WW4|1|AC|A|104
9WW4|1|AC|C|105
9WW4|1|AC|G|106
*
9WW4|1|AC|C|113
9WW4|1|AC|G|114
*
9WW4|1|AC|U|136
9WW4|1|AC|A|137
9WW4|1|AC|C|138
Current chains
- Chain AA
- 28S rRNA (3773-MER)
- Chain AC
- 5.8S rRNA (156-MER)
Nearby chains
- Chain AP
- 60S ribosomal protein L15
- Chain AZ
- 60S ribosomal protein L23a
- Chain Aj
- 60S ribosomal protein L35
- Chain Al
- 60S ribosomal protein L37
- Chain An
- 60S ribosomal protein L39
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