J5_9WW4_008

3D structure

PDB id

9WW4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome non-rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

CAUG*CGAA(PSU)GGC*GA(OMG)*CAC*GGCAG

Length

23 nucleotides

Bulged bases

9WW4|1|BA|U|55, 9WW4|1|BA|A|92, 9WW4|1|BA|C|472

QA status

Modified nucleotides: PSU, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WW4_008 not in the Motif Atlas

Homologous match to J5_9SUM_008

Geometric discrepancy: 0.0591

The information below is about J5_9SUM_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_58574.4

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9WW4|1|BA|C|53
9WW4|1|BA|A|54
9WW4|1|BA|U|55
9WW4|1|BA|G|56
*
9WW4|1|BA|C|89
9WW4|1|BA|G|90
9WW4|1|BA|A|91
9WW4|1|BA|A|92
9WW4|1|BA|PSU|93
9WW4|1|BA|G|94
9WW4|1|BA|G|95
9WW4|1|BA|C|96
*
9WW4|1|BA|G|434
9WW4|1|BA|A|435
9WW4|1|BA|OMG|436
*
9WW4|1|BA|C|457
9WW4|1|BA|A|458
9WW4|1|BA|C|459
*
9WW4|1|BA|G|470
9WW4|1|BA|G|471
9WW4|1|BA|C|472
9WW4|1|BA|A|473
9WW4|1|BA|G|474

Current chains

Chain BA

18S rRNA (1740-MER)

Nearby chains

Chain AX

60S ribosomal protein L23

Chain BB

40S ribosomal protein S4, X isoform

Chain BH

40S ribosomal protein S8

Chain BW

40S ribosomal protein S6

Chain BX

40S ribosomal protein S9

Chain Bc

40S ribosomal protein S24