J5_9WW5_002

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

GGAGU(OMC)*GGAC*GUUC*GCC*GCAGAU(OMC)

Length

24 nucleotides

Bulged bases

9WW5|1|AA|C|2289, 9WW5|1|AA|U|2350

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9WW5_002 not in the Motif Atlas

Homologous match to J5_8GLP_002

Geometric discrepancy: 0.0384

The information below is about J5_8GLP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_08384.4

Basepair signature

cWW-tSH-tSS-tHW-F-cWS-F-tWS-cWW-cWW-F-cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

9WW5|1|AA|G|1335
9WW5|1|AA|G|1336
9WW5|1|AA|A|1337
9WW5|1|AA|G|1338
9WW5|1|AA|U|1339
9WW5|1|AA|OMC|1340
*
9WW5|1|AA|G|1516
9WW5|1|AA|G|1517
9WW5|1|AA|A|1518
9WW5|1|AA|C|1519
*
9WW5|1|AA|G|1658
9WW5|1|AA|U|1659
9WW5|1|AA|U|1660
9WW5|1|AA|C|1661
*
9WW5|1|AA|G|2288
9WW5|1|AA|C|2289
9WW5|1|AA|C|2290
*
9WW5|1|AA|G|2345
9WW5|1|AA|C|2346
9WW5|1|AA|A|2347
9WW5|1|AA|G|2348
9WW5|1|AA|A|2349
9WW5|1|AA|U|2350
9WW5|1|AA|OMC|2351

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AC

5.8S ribosomal RNA; 5.8S rRNA

Chain AF

Large ribosomal subunit protein uL4

Chain AN

60S ribosomal protein L13

Chain AP

60S ribosomal protein L15

Chain Ac

Large ribosomal subunit protein uL15

Chain Ag

60S ribosomal protein L32

Chain As

60S ribosomal protein L28