J5_9WW5_004

3D structure

PDB id

9WW5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome rotated state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69 Å

Loop

Sequence

AGAAGACC*(OMG)GAUAACUG*CUU(5MC)GAUGUC*GG(UR3)U(PSU)AG*(PSU)AGUUU

Length

40 nucleotides

Bulged bases

9WW5|1|AA|A|3908, 9WW5|1|AA|A|4394, 9WW5|1|AA|G|4451, 9WW5|1|AA|U|4452, 9WW5|1|AA|U|4555, 9WW5|1|AA|U|4556

QA status

Modified nucleotides: OMG, 5MC, UR3, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9WW5|1|AA|A|3903
9WW5|1|AA|G|3904
9WW5|1|AA|A|3905
9WW5|1|AA|A|3906
9WW5|1|AA|G|3907
9WW5|1|AA|A|3908
9WW5|1|AA|C|3909
9WW5|1|AA|C|3910
*
9WW5|1|AA|OMG|4392
9WW5|1|AA|G|4393
9WW5|1|AA|A|4394
9WW5|1|AA|U|4395
9WW5|1|AA|A|4396
9WW5|1|AA|A|4397
9WW5|1|AA|C|4398
9WW5|1|AA|U|4399
9WW5|1|AA|G|4400
*
9WW5|1|AA|C|4444
9WW5|1|AA|U|4445
9WW5|1|AA|U|4446
9WW5|1|AA|5MC|4447
9WW5|1|AA|G|4448
9WW5|1|AA|A|4449
9WW5|1|AA|U|4450
9WW5|1|AA|G|4451
9WW5|1|AA|U|4452
9WW5|1|AA|C|4453
*
9WW5|1|AA|G|4528
9WW5|1|AA|G|4529
9WW5|1|AA|UR3|4530
9WW5|1|AA|U|4531
9WW5|1|AA|PSU|4532
9WW5|1|AA|A|4533
9WW5|1|AA|G|4534
*
9WW5|1|AA|PSU|4552
9WW5|1|AA|A|4553
9WW5|1|AA|G|4554
9WW5|1|AA|U|4555
9WW5|1|AA|U|4556
9WW5|1|AA|U|4557

Current chains

Chain AA

28S rRNA (3773-MER)

Nearby chains

Chain AD

60S ribosomal protein L8

Chain AE

Large ribosomal subunit protein uL3

Chain AF

Large ribosomal subunit protein uL4

Chain Ac

Large ribosomal subunit protein uL15

Chain Ad

60S ribosomal protein L29