J5_9XFK_004
3D structure
- PDB id
- 9XFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In situ structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.98 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9XFK|1|I|U|1758, 9XFK|1|I|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9XFK_004 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2645
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9XFK|1|I|G|1674
9XFK|1|I|C|1675
9XFK|1|I|A|1676
9XFK|1|I|A|1677
9XFK|1|I|A|1678
9XFK|1|I|A|1679
9XFK|1|I|U|1680
9XFK|1|I|G|1681
9XFK|1|I|G|1682
*
9XFK|1|I|C|1706
9XFK|1|I|G|1707
*
9XFK|1|I|U|1751
9XFK|1|I|C|1752
*
9XFK|1|I|G|1756
9XFK|1|I|A|1757
9XFK|1|I|U|1758
9XFK|1|I|A|1759
9XFK|1|I|C|1760
9XFK|1|I|C|1761
9XFK|1|I|A|1762
9XFK|1|I|G|1763
9XFK|1|I|C|1764
*
9XFK|1|I|G|1988
9XFK|1|I|G|1989
9XFK|1|I|C|1990
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL3
- Chain S
- Large ribosomal subunit protein uL14
- Chain X
- 50S ribosomal protein L19
Coloring options: