J5_9XFL_004
3D structure
- PDB id
- 9XFL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- In vitro structure of bacterial 50S ribosomes
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.16 Å
Loop
- Sequence
- GCAAAAUGG*CG*UC*GAUACCAGC*GGC
- Length
- 25 nucleotides
- Bulged bases
- 9XFL|1|I|U|1758, 9XFL|1|I|G|1763
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9XFL_004 not in the Motif Atlas
- Homologous match to J5_7A0S_005
- Geometric discrepancy: 0.2649
- The information below is about J5_7A0S_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_99177.2
- Basepair signature
- cWW-F-F-F-cWW-F-F-F-F-F-F-F-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 11
Unit IDs
9XFL|1|I|G|1674
9XFL|1|I|C|1675
9XFL|1|I|A|1676
9XFL|1|I|A|1677
9XFL|1|I|A|1678
9XFL|1|I|A|1679
9XFL|1|I|U|1680
9XFL|1|I|G|1681
9XFL|1|I|G|1682
*
9XFL|1|I|C|1706
9XFL|1|I|G|1707
*
9XFL|1|I|U|1751
9XFL|1|I|C|1752
*
9XFL|1|I|G|1756
9XFL|1|I|A|1757
9XFL|1|I|U|1758
9XFL|1|I|A|1759
9XFL|1|I|C|1760
9XFL|1|I|C|1761
9XFL|1|I|A|1762
9XFL|1|I|G|1763
9XFL|1|I|C|1764
*
9XFL|1|I|G|1988
9XFL|1|I|G|1989
9XFL|1|I|C|1990
Current chains
- Chain I
- 23S rRNA
Nearby chains
- Chain L
- Large ribosomal subunit protein uL3
- Chain S
- Large ribosomal subunit protein uL14
- Chain X
- 50S ribosomal protein L19
Coloring options: