J5_9XTC_001

3D structure

PDB id

9XTC (explore in PDB, NAKB, or RNA 3D Hub)

Description

E.coli delta lepA 30S ribosomal subunit class C, body domain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUGG*CGUG*CUUUC*GAAG*CAAG

Length

21 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XTC|1|A|C|36
9XTC|1|A|U|37
9XTC|1|A|G|38
9XTC|1|A|G|39
*
9XTC|1|A|C|403
9XTC|1|A|G|404
9XTC|1|A|U|405
9XTC|1|A|G|406
*
9XTC|1|A|C|436
9XTC|1|A|U|437
9XTC|1|A|U|438
9XTC|1|A|U|439
9XTC|1|A|C|440
*
9XTC|1|A|G|497
9XTC|1|A|A|498
9XTC|1|A|A|499
9XTC|1|A|G|500
*
9XTC|1|A|C|545
9XTC|1|A|A|546
9XTC|1|A|A|547
9XTC|1|A|G|548

Current chains

Chain A

RNA (1176-MER)

Nearby chains

Chain D

30S ribosomal protein S4

Chain L

30S ribosomal protein S12