J5_9XWO_004

3D structure

PDB id

9XWO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of SecM-arrested 70S ribosome (short SecM)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGAUGAAG*CGAAUG*CA*UAU*AGG

Length

22 nucleotides

Bulged bases

9XWO|1|a|U|50

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9XWO|1|a|C|47
9XWO|1|a|G|48
9XWO|1|a|A|49
9XWO|1|a|U|50
9XWO|1|a|G|51
9XWO|1|a|A|52
9XWO|1|a|A|53
9XWO|1|a|G|54
*
9XWO|1|a|C|116
9XWO|1|a|G|117
9XWO|1|a|A|118
9XWO|1|a|A|119
9XWO|1|a|U|120
9XWO|1|a|G|121
*
9XWO|1|a|C|130
9XWO|1|a|A|131
*
9XWO|1|a|U|148
9XWO|1|a|A|149
9XWO|1|a|U|150
*
9XWO|1|a|A|176
9XWO|1|a|G|177
9XWO|1|a|G|178

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34