J5_9Y4G_002
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CCAGCG*CGUACGG*CCCGGAGUCG*CAAAGCG*UAAG
- Length
- 34 nucleotides
- Bulged bases
- 9Y4G|1|A5|C|159, 9Y4G|1|A5|C|276, 9Y4G|1|A5|C|309
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A5|C|111
9Y4G|1|A5|C|112
9Y4G|1|A5|A|113
9Y4G|1|A5|G|114
9Y4G|1|A5|C|115
9Y4G|1|A5|G|116
*
9Y4G|1|A5|C|155
9Y4G|1|A5|G|156
9Y4G|1|A5|U|157
9Y4G|1|A5|A|158
9Y4G|1|A5|C|159
9Y4G|1|A5|G|160
9Y4G|1|A5|G|161
*
9Y4G|1|A5|C|274
9Y4G|1|A5|C|275
9Y4G|1|A5|C|276
9Y4G|1|A5|G|277
9Y4G|1|A5|G|278
9Y4G|1|A5|A|279
9Y4G|1|A5|G|280
9Y4G|1|A5|U|281
9Y4G|1|A5|C|282
9Y4G|1|A5|G|283
*
9Y4G|1|A5|C|304
9Y4G|1|A5|A|305
9Y4G|1|A5|A|306
9Y4G|1|A5|A|307
9Y4G|1|A5|G|308
9Y4G|1|A5|C|309
9Y4G|1|A5|G|310
*
9Y4G|1|A5|U|327
9Y4G|1|A5|A|328
9Y4G|1|A5|A|329
9Y4G|1|A5|G|330
Current chains
- Chain A5
- LSU-alpha rRNA
Nearby chains
- Chain A6
- Large subunit ribosomal RNA; LSU rRNA
- Chain CG
- 60S ribosomal protein L7a
- Chain CL
- 60S ribosomal protein L13
- Chain CN
- 60S ribosomal protein L15
- Chain Ch
- 60S ribosomal protein L35
- Chain Ci
- 60S ribosomal protein L36
Coloring options: