J5_9Y4G_004
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GCAAGCCGG*UG*UG*CGGACCAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9Y4G|1|A6|G|3620, 9Y4G|1|A6|G|3625
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A6|G|2855
9Y4G|1|A6|C|2856
9Y4G|1|A6|A|2857
9Y4G|1|A6|A|2858
9Y4G|1|A6|G|2859
9Y4G|1|A6|C|2860
9Y4G|1|A6|C|2861
9Y4G|1|A6|G|2862
9Y4G|1|A6|G|2863
*
9Y4G|1|A6|U|2887
9Y4G|1|A6|G|2888
*
9Y4G|1|A6|U|3613
9Y4G|1|A6|G|3614
*
9Y4G|1|A6|C|3618
9Y4G|1|A6|G|3619
9Y4G|1|A6|G|3620
9Y4G|1|A6|A|3621
9Y4G|1|A6|C|3622
9Y4G|1|A6|C|3623
9Y4G|1|A6|A|3624
9Y4G|1|A6|G|3625
9Y4G|1|A6|G|3626
*
9Y4G|1|A6|C|3835
9Y4G|1|A6|A|3836
9Y4G|1|A6|C|3837
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain AI
- 40S ribosomal protein S8
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain CB
- 60S ribosomal protein L3
- Chain CR
- 60S ribosomal protein L19
- Chain CV
- 60S ribosomal protein L23
- Chain CW
- 60S ribosomal protein L24
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