J5_9Y4G_005
3D structure
- PDB id
- 9Y4G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- AGAAGACC*GGAUAACUG*CUUCGAUGUC*GGUUUAG*UAGUUU
- Length
- 40 nucleotides
- Bulged bases
- 9Y4G|1|A6|A|3908, 9Y4G|1|A6|A|4394, 9Y4G|1|A6|G|4451, 9Y4G|1|A6|U|4555, 9Y4G|1|A6|U|4556
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9Y4G|1|A6|A|3903
9Y4G|1|A6|G|3904
9Y4G|1|A6|A|3905
9Y4G|1|A6|A|3906
9Y4G|1|A6|G|3907
9Y4G|1|A6|A|3908
9Y4G|1|A6|C|3909
9Y4G|1|A6|C|3910
*
9Y4G|1|A6|G|4392
9Y4G|1|A6|G|4393
9Y4G|1|A6|A|4394
9Y4G|1|A6|U|4395
9Y4G|1|A6|A|4396
9Y4G|1|A6|A|4397
9Y4G|1|A6|C|4398
9Y4G|1|A6|U|4399
9Y4G|1|A6|G|4400
*
9Y4G|1|A6|C|4444
9Y4G|1|A6|U|4445
9Y4G|1|A6|U|4446
9Y4G|1|A6|C|4447
9Y4G|1|A6|G|4448
9Y4G|1|A6|A|4449
9Y4G|1|A6|U|4450
9Y4G|1|A6|G|4451
9Y4G|1|A6|U|4452
9Y4G|1|A6|C|4453
*
9Y4G|1|A6|G|4528
9Y4G|1|A6|G|4529
9Y4G|1|A6|U|4530
9Y4G|1|A6|U|4531
9Y4G|1|A6|U|4532
9Y4G|1|A6|A|4533
9Y4G|1|A6|G|4534
*
9Y4G|1|A6|U|4552
9Y4G|1|A6|A|4553
9Y4G|1|A6|G|4554
9Y4G|1|A6|U|4555
9Y4G|1|A6|U|4556
9Y4G|1|A6|U|4557
Current chains
- Chain A6
- LSU-beta rRNA (2108-MER)
Nearby chains
- Chain A5
- Large subunit ribosomal RNA; LSU rRNA
- Chain Bb
- Transfer RNA; tRNA
- Chain CA
- 60S ribosomal protein L8
- Chain CB
- 60S ribosomal protein L3
- Chain CC
- 60S ribosomal protein L4
- Chain CI
- 60S ribosomal protein L10-like
- Chain CP
- 60S ribosomal protein L17
- Chain Cb
- 60S ribosomal protein L29
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