J5_9Y4G_007

3D structure

PDB id

9Y4G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tuco-tuco ribosome (rotated, tRNAs, and mRNA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUGAG*CGAGGAUCCAU*AUAG

Length

35 nucleotides

Bulged bases

9Y4G|1|B2|A|590, 9Y4G|1|B2|C|592, 9Y4G|1|B2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y4G|1|B2|C|30
9Y4G|1|B2|U|31
9Y4G|1|B2|U|32
9Y4G|1|B2|G|33
9Y4G|1|B2|U|34
*
9Y4G|1|B2|A|521
9Y4G|1|B2|A|522
9Y4G|1|B2|A|523
9Y4G|1|B2|U|524
9Y4G|1|B2|A|525
9Y4G|1|B2|A|526
9Y4G|1|B2|C|527
*
9Y4G|1|B2|G|558
9Y4G|1|B2|G|559
9Y4G|1|B2|A|560
9Y4G|1|B2|A|561
9Y4G|1|B2|U|562
9Y4G|1|B2|G|563
9Y4G|1|B2|A|564
9Y4G|1|B2|G|565
*
9Y4G|1|B2|C|585
9Y4G|1|B2|G|586
9Y4G|1|B2|A|587
9Y4G|1|B2|G|588
9Y4G|1|B2|G|589
9Y4G|1|B2|A|590
9Y4G|1|B2|U|591
9Y4G|1|B2|C|592
9Y4G|1|B2|C|593
9Y4G|1|B2|A|594
9Y4G|1|B2|U|595
*
9Y4G|1|B2|A|641
9Y4G|1|B2|U|642
9Y4G|1|B2|A|643
9Y4G|1|B2|G|644

Current chains

Chain B2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S9

Chain AX

40S ribosomal protein S23

Chain Ae

40S ribosomal protein S30