J5_9Y79_002

3D structure

PDB id

9Y79 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli transcription-translation loosely coupled complex (TTC-LC^walked) containing mRNA with a 39 nt long spacer, NusG, NusA, and fMet-tRNAs in E-site and P-site

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGG*CGUG*CUUUCAG*CAGAAGAAG*CAAG

Length

28 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9Y79|1|D|C|36
9Y79|1|D|U|37
9Y79|1|D|G|38
9Y79|1|D|G|39
*
9Y79|1|D|C|403
9Y79|1|D|G|404
9Y79|1|D|U|405
9Y79|1|D|G|406
*
9Y79|1|D|C|436
9Y79|1|D|U|437
9Y79|1|D|U|438
9Y79|1|D|U|439
9Y79|1|D|C|440
9Y79|1|D|A|441
9Y79|1|D|G|442
*
9Y79|1|D|C|492
9Y79|1|D|A|493
9Y79|1|D|G|494
9Y79|1|D|A|495
9Y79|1|D|A|496
9Y79|1|D|G|497
9Y79|1|D|A|498
9Y79|1|D|A|499
9Y79|1|D|G|500
*
9Y79|1|D|C|545
9Y79|1|D|A|546
9Y79|1|D|A|547
9Y79|1|D|G|548

Current chains

Chain D

16S rRNA

Nearby chains

Chain J

Small ribosomal subunit protein uS4

Chain R

30S ribosomal protein S12