J5_9YDB_001
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9YDB|1|C|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|A|20
9YDB|1|A|G|21
9YDB|1|A|G|22
*
9YDB|1|C|C|35
9YDB|1|C|G|36
9YDB|1|C|A|37
9YDB|1|C|U|38
9YDB|1|C|G|39
9YDB|1|C|A|40
9YDB|1|C|A|41
9YDB|1|C|G|42
*
9YDB|1|C|U|102
9YDB|1|C|G|103
9YDB|1|C|A|104
9YDB|1|C|A|105
9YDB|1|C|C|106
9YDB|1|C|G|107
*
9YDB|1|C|C|115
9YDB|1|C|G|116
*
9YDB|1|C|C|137
9YDB|1|C|A|138
9YDB|1|C|U|139
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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