J5_9YDB_002
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GC*GCAGAUC
- Length
- 23 nucleotides
- Bulged bases
- 9YDB|1|A|U|1436
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|G|658
9YDB|1|A|G|659
9YDB|1|A|A|660
9YDB|1|A|G|661
9YDB|1|A|U|662
9YDB|1|A|C|663
*
9YDB|1|A|G|799
9YDB|1|A|G|800
9YDB|1|A|A|801
9YDB|1|A|C|802
*
9YDB|1|A|G|941
9YDB|1|A|U|942
9YDB|1|A|U|943
9YDB|1|A|C|944
*
9YDB|1|A|G|1375
9YDB|1|A|C|1376
*
9YDB|1|A|G|1431
9YDB|1|A|C|1432
9YDB|1|A|A|1433
9YDB|1|A|G|1434
9YDB|1|A|A|1435
9YDB|1|A|U|1436
9YDB|1|A|C|1437
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LP
- 60S ribosomal protein L15-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Lg
- 60S ribosomal protein L32
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