J5_9YDB_003
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- CGAG*CGUAA*UGAACGUAG*CGA*UAAGAG
- Length
- 27 nucleotides
- Bulged bases
- 9YDB|1|A|U|719, 9YDB|1|A|A|784, 9YDB|1|A|G|785
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|C|675
9YDB|1|A|G|676
9YDB|1|A|A|677
9YDB|1|A|G|678
*
9YDB|1|A|C|702
9YDB|1|A|G|703
9YDB|1|A|U|704
9YDB|1|A|A|705
9YDB|1|A|A|706
*
9YDB|1|A|U|713
9YDB|1|A|G|714
9YDB|1|A|A|715
9YDB|1|A|A|716
9YDB|1|A|C|717
9YDB|1|A|G|718
9YDB|1|A|U|719
9YDB|1|A|A|720
9YDB|1|A|G|721
*
9YDB|1|A|C|749
9YDB|1|A|G|750
9YDB|1|A|A|751
*
9YDB|1|A|U|782
9YDB|1|A|A|783
9YDB|1|A|A|784
9YDB|1|A|G|785
9YDB|1|A|A|786
9YDB|1|A|G|787
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LF
- 60S ribosomal protein L4-A
- Chain LN
- 60S ribosomal protein L13-A
- Chain LS
- 60S ribosomal protein L18-A
- Chain Lc
- 60S ribosomal protein L28
- Chain Ld
- 60S ribosomal protein L29
- Chain Lk
- 60S ribosomal protein L36-A
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