J5_9YDB_004
3D structure
- PDB id
- 9YDB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic pre-60S ribosomes from uL16 P-site loop mutants in bypass condition. Lsg1,Nmd3 and Tif6 present
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.83 Å
Loop
- Sequence
- GCAAAAUAG*UG*UG*CGGACAAGG*CAC
- Length
- 25 nucleotides
- Bulged bases
- 9YDB|1|A|G|2116, 9YDB|1|A|G|2121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YDB|1|A|G|1906
9YDB|1|A|C|1907
9YDB|1|A|A|1908
9YDB|1|A|A|1909
9YDB|1|A|A|1910
9YDB|1|A|A|1911
9YDB|1|A|U|1912
9YDB|1|A|A|1913
9YDB|1|A|G|1914
*
9YDB|1|A|U|1938
9YDB|1|A|G|1939
*
9YDB|1|A|U|2109
9YDB|1|A|G|2110
*
9YDB|1|A|C|2114
9YDB|1|A|G|2115
9YDB|1|A|G|2116
9YDB|1|A|A|2117
9YDB|1|A|C|2118
9YDB|1|A|A|2119
9YDB|1|A|A|2120
9YDB|1|A|G|2121
9YDB|1|A|G|2122
*
9YDB|1|A|C|2331
9YDB|1|A|A|2332
9YDB|1|A|C|2333
Current chains
- Chain A
- 25S RNA
Nearby chains
- Chain LE
- 60S ribosomal protein L3
- Chain LT
- 60S ribosomal protein L19-A
- Chain LX
- 60S ribosomal protein L23-A
- Chain LY
- 60S ribosomal protein L24-A
- Chain W
- Large subunit GTPase 1
Coloring options: