J5_9YDD_007
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG
- Length
- 26 nucleotides
- Bulged bases
- 9YDD|1|E|A|544
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9YDD_007 not in the Motif Atlas
- Homologous match to J5_9H3G_007
- Geometric discrepancy: 0.0929
- The information below is about J5_9H3G_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_04786.3
- Basepair signature
- cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
9YDD|1|E|C|31
9YDD|1|E|U|32
9YDD|1|E|U|33
9YDD|1|E|G|34
9YDD|1|E|U|35
*
9YDD|1|E|A|473
9YDD|1|E|A|474
9YDD|1|E|A|475
9YDD|1|E|U|476
9YDD|1|E|A|477
9YDD|1|E|A|478
9YDD|1|E|C|479
*
9YDD|1|E|G|509
9YDD|1|E|G|510
9YDD|1|E|A|511
9YDD|1|E|A|512
9YDD|1|E|U|513
9YDD|1|E|G|514
*
9YDD|1|E|C|543
9YDD|1|E|A|544
9YDD|1|E|A|545
9YDD|1|E|U|546
*
9YDD|1|E|A|592
9YDD|1|E|U|593
9YDD|1|E|A|594
9YDD|1|E|G|595
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sc
- 40S ribosomal protein S23-A
- Chain Sg
- 40S ribosomal protein S30-A
Coloring options: