J5_9YDD_008
3D structure
- PDB id
- 9YDD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with A/A, P/P tRNAs from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- CAUG*CGAAUGGC*GAG*CAC*GGCAG
- Length
- 23 nucleotides
- Bulged bases
- 9YDD|1|E|A|93, 9YDD|1|E|C|424
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9YDD_008 not in the Motif Atlas
- Homologous match to J5_9PN5_009
- Geometric discrepancy: 0.0552
- The information below is about J5_9PN5_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_58574.4
- Basepair signature
- cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
9YDD|1|E|C|54
9YDD|1|E|A|55
9YDD|1|E|U|56
9YDD|1|E|G|57
*
9YDD|1|E|C|90
9YDD|1|E|G|91
9YDD|1|E|A|92
9YDD|1|E|A|93
9YDD|1|E|U|94
9YDD|1|E|G|95
9YDD|1|E|G|96
9YDD|1|E|C|97
*
9YDD|1|E|G|386
9YDD|1|E|A|387
9YDD|1|E|G|388
*
9YDD|1|E|C|409
9YDD|1|E|A|410
9YDD|1|E|C|411
*
9YDD|1|E|G|422
9YDD|1|E|G|423
9YDD|1|E|C|424
9YDD|1|E|A|425
9YDD|1|E|G|426
Current chains
- Chain E
- 18S rRNA
Nearby chains
- Chain LX
- 60S ribosomal protein L23-A
- Chain LY
- 60S ribosomal protein L24-A
- Chain SS
- 40S ribosomal protein S4-A
- Chain ST
- 40S ribosomal protein S6-A
- Chain SV
- 40S ribosomal protein S8-A
- Chain SW
- 40S ribosomal protein S9-A
- Chain Sd
- 40S ribosomal protein S24-A
Coloring options: