J5_9YDE_001
3D structure
- PDB id
- 9YDE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.82 Å
Loop
- Sequence
- AGG*CGAUGAAG*UGAACG*CG*CAU
- Length
- 22 nucleotides
- Bulged bases
- 9YDE|1|C|U|38
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J5_9YDE_001 not in the Motif Atlas
- Homologous match to J5_9PN5_001
- Geometric discrepancy: 0.0515
- The information below is about J5_9PN5_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J5_27223.4
- Basepair signature
- cWW-cWW-cWW-cWW-F-cWW-F-tSH-tWW-tHH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
9YDE|1|A|A|20
9YDE|1|A|G|21
9YDE|1|A|G|22
*
9YDE|1|C|C|35
9YDE|1|C|G|36
9YDE|1|C|A|37
9YDE|1|C|U|38
9YDE|1|C|G|39
9YDE|1|C|A|40
9YDE|1|C|A|41
9YDE|1|C|G|42
*
9YDE|1|C|U|102
9YDE|1|C|G|103
9YDE|1|C|A|104
9YDE|1|C|A|105
9YDE|1|C|C|106
9YDE|1|C|G|107
*
9YDE|1|C|C|115
9YDE|1|C|G|116
*
9YDE|1|C|C|137
9YDE|1|C|A|138
9YDE|1|C|U|139
Current chains
- Chain A
- 25S RNA
- Chain C
- 8S RNA
Nearby chains
- Chain LP
- 60S ribosomal protein L15-A
- Chain LZ
- 60S ribosomal protein L25
- Chain Lj
- 60S ribosomal protein L35-A
- Chain Ll
- 60S ribosomal protein L37-A
- Chain Ln
- 60S ribosomal protein L39
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