J5_9YDE_007

3D structure

PDB id

9YDE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Eukaryotic 80S ribosome with P/P tRNA from uL16 P-site loop mutants in bypass condition

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

CUUGU*AAAUAAC*GGAAUG*CAAU*AUAG

Length

26 nucleotides

Bulged bases

9YDE|1|E|A|544

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9YDE_007 not in the Motif Atlas

Homologous match to J5_9H3G_007

Geometric discrepancy: 0.1495

The information below is about J5_9H3G_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_04786.3

Basepair signature

cWW-F-F-F-F-F-cWW-cWW-cWH-F-cWW-F-F-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9YDE|1|E|C|31
9YDE|1|E|U|32
9YDE|1|E|U|33
9YDE|1|E|G|34
9YDE|1|E|U|35
*
9YDE|1|E|A|473
9YDE|1|E|A|474
9YDE|1|E|A|475
9YDE|1|E|U|476
9YDE|1|E|A|477
9YDE|1|E|A|478
9YDE|1|E|C|479
*
9YDE|1|E|G|509
9YDE|1|E|G|510
9YDE|1|E|A|511
9YDE|1|E|A|512
9YDE|1|E|U|513
9YDE|1|E|G|514
*
9YDE|1|E|C|543
9YDE|1|E|A|544
9YDE|1|E|A|545
9YDE|1|E|U|546
*
9YDE|1|E|A|592
9YDE|1|E|U|593
9YDE|1|E|A|594
9YDE|1|E|G|595

Current chains

Chain E

18S rRNA

Nearby chains

Chain SW

40S ribosomal protein S9-A

Chain Sc

40S ribosomal protein S23-A

Chain Sg

40S ribosomal protein S30-A