J5_9YPV_003
3D structure
- PDB id
- 9YPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GCP*Phe-tRNA*ribosome in the open state, Structure IId
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGAGUC*GGAC*GUUC*GCC*GCAGAUC
- Length
- 24 nucleotides
- Bulged bases
- 9YPV|1|5|C|2289, 9YPV|1|5|U|2350
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPV|1|5|G|1335
9YPV|1|5|G|1336
9YPV|1|5|A|1337
9YPV|1|5|G|1338
9YPV|1|5|U|1339
9YPV|1|5|C|1340
*
9YPV|1|5|G|1516
9YPV|1|5|G|1517
9YPV|1|5|A|1518
9YPV|1|5|C|1519
*
9YPV|1|5|G|1658
9YPV|1|5|U|1659
9YPV|1|5|U|1660
9YPV|1|5|C|1661
*
9YPV|1|5|G|2288
9YPV|1|5|C|2289
9YPV|1|5|C|2290
*
9YPV|1|5|G|2345
9YPV|1|5|C|2346
9YPV|1|5|A|2347
9YPV|1|5|G|2348
9YPV|1|5|A|2349
9YPV|1|5|U|2350
9YPV|1|5|C|2351
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
- Chain r
- eL28
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