J5_9YPW_001
3D structure
- PDB id
- 9YPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- GTPBP1*GDP*Phe-tRNA*ribosome in the post-GTP hydrolysis state, Structure IV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUG*CGAUGAAG*CGAACG*CG*UAC
- Length
- 22 nucleotides
- Bulged bases
- 9YPW|1|8|U|38
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9YPW|1|5|G|19
9YPW|1|5|U|20
9YPW|1|5|G|21
*
9YPW|1|8|C|35
9YPW|1|8|G|36
9YPW|1|8|A|37
9YPW|1|8|U|38
9YPW|1|8|G|39
9YPW|1|8|A|40
9YPW|1|8|A|41
9YPW|1|8|G|42
*
9YPW|1|8|C|101
9YPW|1|8|G|102
9YPW|1|8|A|103
9YPW|1|8|A|104
9YPW|1|8|C|105
9YPW|1|8|G|106
*
9YPW|1|8|C|113
9YPW|1|8|G|114
*
9YPW|1|8|U|136
9YPW|1|8|A|137
9YPW|1|8|C|138
Current chains
- Chain 5
- 28S ribosomal RNA
- Chain 8
- 5.8S ribosomal RNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain X
- eL23
- Chain h
- eL35
- Chain j
- Ribosomal protein L37
- Chain l
- eL39
Coloring options: