J5_9ZTL_003

3D structure

PDB id

9ZTL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Single Particle Cryo EM Analysis of a Ribosome Nascent Globin Complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CAAG*CGGACGGG*CAC*GAC*GGCAG

Length

23 nucleotides

Bulged bases

9ZTL|1|A|A|109, 9ZTL|1|A|C|352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J5_9ZTL_003 not in the Motif Atlas

Homologous match to J5_6CZR_021

Geometric discrepancy: 0.1355

The information below is about J5_6CZR_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J5_59910.5

Basepair signature

cWW-F-tSS-cSS-F-cWW-cWW-cWW-F-F-cWW-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9ZTL|1|A|C|58
9ZTL|1|A|A|59
9ZTL|1|A|A|60
9ZTL|1|A|G|61
*
9ZTL|1|A|C|106
9ZTL|1|A|G|107
9ZTL|1|A|G|108
9ZTL|1|A|A|109
9ZTL|1|A|C|110
9ZTL|1|A|G|111
9ZTL|1|A|G|112
9ZTL|1|A|G|113
*
9ZTL|1|A|C|314
9ZTL|1|A|A|315
9ZTL|1|A|C|316
*
9ZTL|1|A|G|337
9ZTL|1|A|A|338
9ZTL|1|A|C|339
*
9ZTL|1|A|G|350
9ZTL|1|A|G|351
9ZTL|1|A|C|352
9ZTL|1|A|A|353
9ZTL|1|A|G|354

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

30S ribosomal protein S20

Chain j

50S ribosomal protein L14